BtaEX6095951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53237097-53238926:+
Coord C1 exon
chr22:53237097-53237253
Coord A exon
chr22:53237600-53237862
Coord C2 exon
chr22:53238769-53238926
Length
263 bp
Sequences
Splice sites
3' ss Seq
GACATGTCCTCTTCCCACAGCCG
3' ss Score
9.82
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
CGTGCGGCCAAGTGTTCCTGAAAATCTTGGGAGGACACGACAGCGAGGAAGGGAAGTGGCCCTGGCAGGTGAGCCTGAGGGTCCGTAACAGACATGTGTGCGGAGCTTCCCTCGTCACAGAGAGGTGGGTGCTGACTGCAGGCCACTGTATTTTAAG
Seq A exon
CCGTTACCAGTACAGTGTCACGATGGGAGATCGGAAACTCCAGGGTACATTATCAGGGTTGGTGGTCCCTGTCAGCCGCGTCGTCGTTCACCCTCAGTTCTCAACAAGTGGAACCGTTAAAAATGACCTTGCTCTTCTCCGGCTCCGCTACCCTGTAAATTTCACTGGCGTTATCCAGCCTATATGCATCCCTGAGAAGACTTTCCGCGTGCAAGCTGGGACCAGGTGCTGGGTGACCGGATGGGGAAGGAAGCAAGAATTTG
Seq C2 exon
GCCCACTTGTGTCTGAAGTTCTCCAGGAGATCGACCAGTATATCATGTACTATGAAAAATGTAATGGGCTGCTCCAGATGGCCCTACGAACAGATAAGGATTTAGTACAAGAAGGAGTGATCTGCGGCTATAATAGTATAGGAAAAGATTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454-'2-3,'2-1,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
PF0008921=Trypsin=FE(38.1=100)
C2:
PF0008921=Trypsin=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCAAGTGTTCCTGAAAA
R:
TACTATTATAGCCGCAGATCACTCCT
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]