DreEX0087951 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21622796-21625455:-
Coord C1 exon
chr9:21625310-21625455
Coord A exon
chr9:21623408-21623522
Coord C2 exon
chr9:21622796-21623038
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTGCACATTTGTAGCAT
3' ss Score
6.19
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
CAGTTAGTTTAAAAAGCAGTCTCCTGTCCCTGAGCCAAGAAGAGTTGAATCAGTCTTTATCCCGGTTTGTCAAAGAAGTACGTCGTCCCAATGGTGAACACTACAGTCCAGACAGCCTCCTTTACCTCTGTCTGGGTATCCAGAAG
Seq A exon
CATTTGCAGGACAAAGGAAGGACAGATGACCTCTTTAATGACTCACAGTATGAAATGTTTGGGGAGGAACTGAACAAGCTCCTCAAAGACTGGCAACCCAGTGTTCTTCCGGATG
Seq C2 exon
GTTCTCGGTGGAGTCGTGTTGAAGAGCAATATCTGTGGAGCAGCGGACAGCTTGGAGAACAGGCGCCTTCTGTCCTGCTGAGATCTGTATTCTATCTCAACACCAAATACTTTGGTCTTCGCACCCCAGAACAGCACTTACGCCTCTCATTTGCAAACGTCTATGGCCCAAGCAGCTCGAAACCGCACAGCCATGAGACCACCGTCTGTATACGCATCCCCTCCATCTCACAGGAGCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.026 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(46.6=98.8)
Main Skipping Isoform:
ENSDART00000133469fB7354
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACGTCGTCCCAATGGTGA
R:
CTGCTTGGGCCATAGACGTTT
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]