BtaEX6056658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36393300-36396683:-
Coord C1 exon
chr12:36396532-36396683
Coord A exon
chr12:36394172-36394286
Coord C2 exon
chr12:36393300-36393550
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTTTTTCAGTAC
3' ss Score
10.22
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CTAAGTCAGTGAAGTTGAAAGAGGATCTGCTCTCTCACACCACGGCTGAGCTGGACTACGGCCTGGCCCACTTTGTCAATGAGATCCGAAGGCCCAATGGGGAGAGCTACGCACCCGATAGCATCTACTATCTCTGCCTTGGAATTCAGGAG
Seq A exon
TACTTGTGTGGTAGTAATCGAAAAGACAACATATTTATTGATCCAGGATACCAGACATTTGAGCAAGAATTGAATAAGATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq C2 exon
GGTCAATATTTTCTCGAGTTGAAGAAGATTATCTGTGGAGGATAAAACAGCTAGGATCACACTCTCCAGTAGCTCTTCTGAACACCCTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAGCACTTACGGCTTTCCTTTGGCACTGTGTTTAGGCACTGGAAAAAAAACCCTTTAACCATGGAAAATAAAGCCTGTCTTCGGTACCAAGTGTCTTCCTTGTGCGGAACAGATAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'43-42,'43-40,44-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(48.3=98.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCCCACTTTGTCAATGA
R:
CAGTGCCAAAGGAAAGCCGTA
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]