HsaEX6039445 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20067239-20083032:+
Coord C1 exon
chr13:20067239-20067390
Coord A exon
chr13:20082016-20082130
Coord C2 exon
chr13:20082781-20083032
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTTTTTTTTTTATAGTAT
3' ss Score
7.84
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CTAAATCAGTAAAGTTAAAAGAGGATCTACTCTCTCACACCACAGCTGAGCTTAACTATGGGTTAGCTCATTTTGTCAATGAGATCCGACGGCCAAATGGAGAGAATTATGCACCTGACAGCATCTATTACCTTTGCCTTGGAATACAGGAG
Seq A exon
TATTTGTGTGGAAGTAATCGAAAAGACAACATATTTATTGATCCTGGATACCAAACATTTGAGCAAGAATTGAATAAAATACTGCGAAGCTGGCAACCAAGCATACTTCCAGATG
Seq C2 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAGCTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(0.1=0.0)
C2:
PF120123=DUF3504=PU(48.8=98.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGATCCGACGGCCAAA
R:
CCAATGCCTAAACACAGTGCC
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains