GgaEX0025506 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183333850-183338916:-
Coord C1 exon
chr1:183338765-183338916
Coord A exon
chr1:183335251-183335365
Coord C2 exon
chr1:183333850-183334190
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTACTTTTTTTTTCTGTAGTAT
3' ss Score
7.06
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
CAAAGTCTGTGAAATTAAAGGAAGATCTATTATCACATACTTCAGCTGAGTTAAACTATGGGTTGGCCCATTTTGTCAATGAAATTCGAAGGCCTAATGGAGAGAACTATGCACCTGACAGCATCTATTATCTGTGTCTTGGGATTCAGGAG
Seq A exon
TATTTGTATGGAAGTAACCGAAAAGACAACATCTTTATTGATCCAATCTACCAGACGTTTGAACAAGAATTAAATAAAATCCTTAGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq C2 exon
GATCAATATTCTCTCGAGTGGAAGAGGATTATCTATGGAGGATTAAACAGCTAGGATCACATTCGCCAGTTGCTCTTCTGAATACTCTGTTCTACTTTAACACCAAGTATTTTGGTCTGAAAACAGTGGAGCAGCACTTAAGACTTTCTTTTGGCACTGTTTTCAGACAGTGGAAAAAAAATCCTCTAACAATGGAAAGCAAAGCTTGTCTTCGATATCAGGTGTCTTCCCTGTGCAGAGCTGATAGTGAAGGTACTATGACAGTTCCAAAATAAGTATTGCAGGAACATCCACGTTTCACTCATCTGAGGGACATCTGGGCAGCTTGCCAGGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'29-40,'29-38,30-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCTTGGGATTCAGGAG
R:
TGCACAGGGAAGACACCTGAT
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]