DreEX6000521 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4638173-4640295:-
Coord C1 exon
chr4:4640227-4640295
Coord A exon
chr4:4638996-4639112
Coord C2 exon
chr4:4638173-4638247
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTTCTCTGTTTGCAGTTC
3' ss Score
11.38
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
AGTTTTCCACAGAAGTTCTTCCACAGTAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAACAGGCG
Seq A exon
TTCCACAACAAGGTGACGTGTTTCATGCTGCATCAGATTGAGGAGCCCTGTTCACTGGGAGCTCACGCCGGGGTCATTGTCCCACCATCCTGGATTATTAAAGTCCGGAAACCGCAG
Seq C2 exon
AGCTCATTTAAAAACTCCACTCGGAGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.800
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(37.3=100)
A:
PF0013017=C1_1=PD(28.8=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAGAAGTTCTTCCACAGT
R:
ATCCGTGCCCTTTTTGCTGG
Band lengths:
139-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]