DreEX6000676 @ danRer10
Exon Skipping
Gene
ENSDARG00000045837 | SSC5D (2 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5390344-5394470:+
Coord C1 exon
chr4:5390344-5390652
Coord A exon
chr4:5392565-5392870
Coord C2 exon
chr4:5394382-5394470
Length
306 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTGTGACTATTAGATA
3' ss Score
5.82
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTCCTGTCAGGCTCATTAATGGAAATAACTCGTGTTCTGGACGAGTGGAGGTTTTCTATAGTGGTCAGTGGGGAACAGTGTGTGGTGATGGCTGGGATCTGACAGATGCTGCAGTGCTGTGTAAAGATCTGGGATGTGGAGATGCCATTGAGGTCAAAAATGATAATTATTTTGGCCAGGGATCGGGGCCGGTATGGCTAAGTAATCTGCAGTGCTCTAGTACTGATACAAGGCTGCGAGACTGTAAATCAAGCGGATGGAGGATTGATAGCTGCGGACATGAGAACGATGCAGGAGTTATCTGTCATG
Seq A exon
ATAACGTTAGGCTGGTCAACGGCTTCAATCCCTGTTCTGGACGAGTGGAGGTTCTCCTTAATGGTCAGTGGGGAACAGTGTGTGATGACGGCTGGGATGAGGCAGATGCTGCGGTGGTGTGTAAACGGCTGGGCTGCCGCTCTGTTCTGGAAATAAAAAAAGCAGCTTATTTTGGACAGGGCTCAGGAACAGTGTGGATGAATAATGTGAGCTGTTTTGGGGATGAGTCTGCATTGACGAGCTGTTCATACACACGCAGTCCAACAAGCTGTGGCCATGAGAAAGATGCTGGAGTCATCTGCGGAT
Seq C2 exon
ATTTTAATATCTTTTTGAGGATTGAAGTGAAGGCTGTGGCTGGACTCGACCCAAACACTGCTGCAATCATGAATAAACTTTCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045837-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=94.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGGACGAGTGGAGGTT
R:
TGATTGCAGCAGTGTTTGGGT
Band lengths:
346-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]