BtaEX0028691 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:7987848-8017751:+
Coord C1 exon
chr6:7987848-7987989
Coord A exon
chr6:7996653-7996858
Coord C2 exon
chr6:8017471-8017751
Length
206 bp
Sequences
Splice sites
3' ss Seq
CAAGAATGCTCTGTTTCCAGGGG
3' ss Score
5.35
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTTCCAATCAGACTGATGGATGGAGAAAATAAGAAGGAAGGACGAGTGGAGGTTTTTATCAATGGCCAGTGGGGAACAGTTTGTGATGATGGGTGGACTGATAAGGATGCAACTGTGATCTGTCGACAGCTTGGCTACAA
Seq A exon
GGGCCCAGCCAGAGCAAGGAGCATGGCGTATTTTGGGGAAGGGGAGGGACCCATCCATATGGATAATGTGAAGTGTACAGGAAATGAACGGTCCCTGGCCGACTGTGTCAGACAAAACATCGGAGACCACAACTGCCGCCACAGTGAAGACGCAGGAGTTATTTGTGATTATCTTGGGAAAAAAGCATCAGGAAACAATAGTAAAG
Seq C2 exon
GTACGGTAACAGTACTAGGAACTACGTGGTTCGGGTTGGGGATTATCACACGCTGGTGCCGGAGGAGTTCGAAGAAGAGATCAGAGTTGAGCAGATCGTAACCCACCGGCTCTACCGCCCGCACAGCAATGACTATGACATCGCCCTGGTTAGGTTACAAGGACCAGAGGAGCAGTGTGCCAGGCTCAGCAGCCACGTTCTGCCTGCCTGCTTGCCGCGCTGGAGAGAGAGGCCACAGAAGAGAGCACACAACTGCTACGTAACGGGATGGGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705_MULTIEX2-2/5=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGACAGCTTGGCTACAA
R:
GTCTCCCCATCCCGTTACGTA
Band lengths:
298-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development