HsaEX6085944 @ hg38
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine 12 [Source:HGNC Symbol;Acc:HGNC:9477]
Coordinates
chr4:118295778-118308577:-
Coord C1 exon
chr4:118308436-118308577
Coord A exon
chr4:118298733-118298938
Coord C2 exon
chr4:118295778-118295856
Length
206 bp
Sequences
Splice sites
3' ss Seq
TAAGAATGTTCTGTCTTCAGGGG
3' ss Score
7.33
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTTCCTGTCAGACTGATGGATGGAGAAAATAAGAAAGAAGGACGAGTGGAGGTTTTTATCAATGGCCAGTGGGGAACAATCTGTGATGATGGATGGACTGATAAGGATGCAGCTGTGATCTGTCGTCAGCTTGGCTACAA
Seq A exon
GGGTCCTGCCAGAGCAAGAACCATGGCTTACTTTGGAGAAGGAAAAGGACCCATCCATGTGGATAATGTGAAGTGCACAGGAAATGAGAGGTCCTTGGCTGACTGTATCAAGCAAGATATTGGAAGACACAACTGCCGCCACAGTGAAGATGCAGGAGTTATTTGTGATTATTTTGGCAAGAAGGCCTCAGGTAACAGTAATAAAG
Seq C2 exon
AGTCCCTCTCATCTGTTTGTGGCTTGAGATTACTGCACCGTCGGCAGAAGCGGATCATTGGTGGGAAAAATTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099-'14-20,'14-17,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=PU(3.3=29.6)
Main Skipping Isoform:
ENST00000296498fB23538
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCTGTCAGACTGATGGA
R:
TTTTTCCCACCAATGATCCGCT
Band lengths:
212-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains