GgaEX1046467 @ galGal4
Exon Skipping
Gene
ENSGALG00000012004 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:HGNC:9477]
Coordinates
chr4:54454488-54461793:+
Coord C1 exon
chr4:54454488-54454629
Coord A exon
chr4:54460848-54461053
Coord C2 exon
chr4:54461715-54461793
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAAATGTATTTTGTTTCCAGAGG
3' ss Score
6.18
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTCCTCCCATCAGGCTGATGGATGGTGAGAATAAGAAGGAAGGACGCGTAGAGATTTTTTTCAATGGTCAGTGGGGCACGATTTGTGATGACGGATGGTCTGATAAGGATGCAGCTGTAGTTTGTCGACAGCTTGGCTACAA
Seq A exon
AGGTCCAGCAAGAGCAAGGACAATGGCATATTTTGGGGAAGGCAAAGGCCCAATCCACGTGGATAATGTAAAATGTACTGGAAGTGAGAGATCCTTGGCAGACTGCATTAAGCAGGACATTGGAACACACAACTGCCGTCACAGTGAGGATGCAGGCGTCATCTGTGACCACCTAGGCAAGAAGGTCCCTGGGAACAGCAACAAAG
Seq C2 exon
ATTCTCTTGCTTCTGTTTGTGGATTGAGGTTACTACATCGTCGACAAAAGCGAATAATTGGTGGGAAAAATTCTTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'13-16,'13-14,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=PU(3.3=29.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCCATCAGGCTGAT
R:
CGTAAAGAATTTTTCCCACCAATTAT
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]