MmuEX6073906 @ mm10
Exon Skipping
Gene
ENSMUSG00000027978 | Prss12
Description
protease, serine 12 neurotrypsin (motopsin) [Source:MGI Symbol;Acc:MGI:1100881]
Coordinates
chr3:123485423-123489634:+
Coord C1 exon
chr3:123485423-123485564
Coord A exon
chr3:123486957-123487162
Coord C2 exon
chr3:123489556-123489634
Length
206 bp
Sequences
Splice sites
3' ss Seq
GAAGAGCACTCTGTTTCCAGGGG
3' ss Score
3.82
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTTTCCCATCAGACTAGTGGATGGAGAGAATAAGAAGGAAGGACGAGTGGAGGTTTTTGTCAATGGCCAATGGGGAACAATCTGCGATGACGGATGGACCGATAAGCATGCAGCTGTGATCTGCCGGCAGCTTGGCTATAA
Seq A exon
GGGTCCTGCCAGAGCAAGGACTATGGCTTATTTTGGGGAAGGAAAAGGCCCCATCCACATGGATAATGTGAAGTGCACAGGAAATGAGAAGGCCCTGGCTGACTGTGTCAAACAAGACATTGGAAGGCACAACTGCCGCCACAGTGAGGATGCAGGAGTCATCTGTGACTATTTAGAGAAGAAAGCATCAAGTAGTGGTAATAAAG
Seq C2 exon
AGATGCTCTCATCTGGATGTGGACTGAGGTTACTGCACCGTCGGCAGAAACGGATCATTGGTGGGAACAATTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027978-'7-12,'7-11,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=PU(3.3=29.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCCATCAGACTAGTGGATGG
R:
CTTAAAGAATTGTTCCCACCAATGA
Band lengths:
220-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types