GgaEX1046467 @ galGal3
Exon Skipping
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56591093-56598398:+
Coord C1 exon
chr4:56591093-56591234
Coord A exon
chr4:56597453-56597658
Coord C2 exon
chr4:56598320-56598398
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAAATGTATTTTGTTTCCAGAGG
3' ss Score
6.18
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTCCTCCCATCAGGCTGATGGATGGTGAGAATAAGAAGGAAGGACGCGTAGAGATTTTTTTCAATGGTCAGTGGGGCACGATTTGTGATGACGGATGGTCTGATAAGGATGCAGCTGTAGTTTGTCGACAGCTTGGCTACAA
Seq A exon
AGGTCCAGCAAGAGCAAGGACAATGGCATATTTTGGGGAAGGCAAAGGCCCAATCCACGTGGATAATGTAAAATGTACTGGAAGTGAGAGATCCTTGGCAGACTGCATTAAGCAGGACATTGGAACACACAACTGCCGTCACAGTGAGGATGCAGGCGTCATCTGTGACCACCTAGGCAAGAAGGTCCCTGGGAACAGCAACAAAG
Seq C2 exon
ATTCTCTTGCTTCTGTTTGTGGATTGAGGTTACTACATCGTCGACAAAAGCGAATAATTGGTGGGAAAAATTCTTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=PU(4.9=29.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCCATCAGGCTGAT
R:
CGTAAAGAATTTTTCCCACCAATTAT
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]