HsaEX6085944 @ hg19
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:9477]
Coordinates
chr4:119216933-119229732:-
Coord C1 exon
chr4:119229591-119229732
Coord A exon
chr4:119219888-119220093
Coord C2 exon
chr4:119216933-119217011
Length
206 bp
Sequences
Splice sites
3' ss Seq
TAAGAATGTTCTGTCTTCAGGGG
3' ss Score
7.33
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTTCCTGTCAGACTGATGGATGGAGAAAATAAGAAAGAAGGACGAGTGGAGGTTTTTATCAATGGCCAGTGGGGAACAATCTGTGATGATGGATGGACTGATAAGGATGCAGCTGTGATCTGTCGTCAGCTTGGCTACAA
Seq A exon
GGGTCCTGCCAGAGCAAGAACCATGGCTTACTTTGGAGAAGGAAAAGGACCCATCCATGTGGATAATGTGAAGTGCACAGGAAATGAGAGGTCCTTGGCTGACTGTATCAAGCAAGATATTGGAAGACACAACTGCCGCCACAGTGAAGATGCAGGAGTTATTTGTGATTATTTTGGCAAGAAGGCCTCAGGTAACAGTAATAAAG
Seq C2 exon
AGTCCCTCTCATCTGTTTGTGGCTTGAGATTACTGCACCGTCGGCAGAAGCGGATCATTGGTGGGAAAAATTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099-'9-15,'9-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=80.0)
C2:
PF0008921=Trypsin=PU(3.3=29.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCTGTCAGACTGATGGA
R:
TTTTTCCCACCAATGATCCGCT
Band lengths:
212-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)