BtaEX0028694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:8000797-8020932:+
Coord C1 exon
chr6:8000797-8000919
Coord A exon
chr6:8017471-8017751
Coord C2 exon
chr6:8020236-8020932
Length
281 bp
Sequences
Splice sites
3' ss Seq
GAGCTCTCTCTGCCTCTCAGGTA
3' ss Score
7.95
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGCAGTTGGCCTTGGCAAGTATCCCTCCGGCTGAAGTCATCCCATGGAGACGGTAGGCTCCTTTGTGGGGCCACGCTCCTGAGTAGCTGCTGGGTCCTTACAGCAGCACACTGCTTCAAGAG
Seq A exon
GTACGGTAACAGTACTAGGAACTACGTGGTTCGGGTTGGGGATTATCACACGCTGGTGCCGGAGGAGTTCGAAGAAGAGATCAGAGTTGAGCAGATCGTAACCCACCGGCTCTACCGCCCGCACAGCAATGACTATGACATCGCCCTGGTTAGGTTACAAGGACCAGAGGAGCAGTGTGCCAGGCTCAGCAGCCACGTTCTGCCTGCCTGCTTGCCGCGCTGGAGAGAGAGGCCACAGAAGAGAGCACACAACTGCTACGTAACGGGATGGGGAGACACAG
Seq C2 exon
GACCAGCCTACTCAAGAACTCTGCAACAAGGAGCCATCCCCTTACTTCCCAAGAGGTTTTGTGAACATCGTTATAAGGGTCGGTTTACACGAAGGATGCTCTGTGCCGGAAACCTCCATGAACACAAACGTGTGGACAGTTGCCAAGGAGACAGCGGAGGACCGCTCGTGTGTGAACGACTGGGAGAGCGCTGGGTTGTGTATGGGGTGACCTCCTGGGGATACGGCTGTGGAGTCAAGGATTCCCCTGGTGTTTATACTGAAGTCTCAGCCTTTGTACCTTGGATAAAAAGGGTCACCAAACTGTAATCCTTCATGGAAATGTCAAGAAGATAGTATTTAAAGAATATGTTGGAAAATTTCCAACATTGGCATTTAGCCAGAGATGCCAACTAATGGGAGAGGAGATCTTTGTTTTTGTGTTCTGTGTTGATAAAAGTGATGTACCTCTTTGCTGCTTGAGAATGATGTGAACATTCTGGTTACAGATACCTCAGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705_MULTIEX2-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.2=100)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCATCCCATGGAGACGGT
R:
CAGGAGGTCACCCCATACACA
Band lengths:
306-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development