RnoEX0070322 @ rn6
Exon Skipping
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227702107-227717884:+
Coord C1 exon
chr2:227702107-227702229
Coord A exon
chr2:227716600-227716880
Coord C2 exon
chr2:227717546-227717884
Length
281 bp
Sequences
Splice sites
3' ss Seq
ATTTGGCTCTTTCCGTTCAGGTA
3' ss Score
9.56
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGGTGCCTGGCCTTGGCAGGCTTCCCTCAGGCTGAAGTCGACCCACGGAGATGGCAGGCTGCTCTGTGGAGCCACCCTTCTAAGTAGCTGCTGGGTCCTGACAGCTGCGCACTGTTTCAAAAG
Seq A exon
GTACGGTAACAACTCGAGGAGTTATGCCGTCCGAGTTGGCGATTATCATACTTTGGTTCCCGAGGAGTTTGAACAAGAAATAGGGGTCCAACAGATTGTGATTCACAGGAACTATCGGCCAGACAGCAGCGACTATGACATCGCCCTGGTCAGATTACAAGGATCAGGGGAGCAATGTGCCAGACTAAGCACCCACGTTTTGCCAGCCTGTTTACCTCTATGGAGAGAAAGGCCACAGAAAACAGCCTCCAACTGTCACATAACAGGATGGGGAGACACAG
Seq C2 exon
GTCGTGCTTACTCAAGAACTCTACAACAAGCAGCTGTGCCTTTGTTACCCAAGAGGTTTTGTAAGGAACGTTACAAGGGACTGTTTACTGGGAGAATGCTCTGTGCTGGAAACCTCCAAGAAGACAACCGTGTGGACAGCTGCCAGGGAGACAGCGGAGGACCACTTATGTGTGAAAAGCCCGATGAAACTTGGGTTGTGTATGGGGTGACTTCCTGGGGGTATGGATGCGGAATCAAAGACACTCCAGGAGTTTATACCAGAGTCCCTGCCTTTGTACCTTGGATAAAAAGTGTTACGAGTCTGTAATTTATGGGAAGCTCAAGAAAAAGAGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353-'8-10,'8-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.2=100)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCGCACTGTTTCAAAA
R:
TCCAAGGTACAAAGGCAGGGA
Band lengths:
307-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]