HsaEX6085946 @ hg19
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:9477]
Coordinates
chr4:119201193-119216216:-
Coord C1 exon
chr4:119216094-119216216
Coord A exon
chr4:119203986-119204266
Coord C2 exon
chr4:119201193-119203398
Length
281 bp
Sequences
Splice sites
3' ss Seq
TAGTACTCTCTGCCTCTCAGGTA
3' ss Score
6.86
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGTGGTTGGCCTTGGCAGGTTTCCCTCCGGCTGAAGTCATCCCATGGAGATGGCAGGCTCCTCTGCGGGGCTACGCTCCTGAGTAGCTGCTGGGTCCTCACAGCAGCACACTGTTTCAAGAG
Seq A exon
GTATGGCAACAGCACTAGGAGCTATGCTGTTAGGGTTGGAGATTATCATACTCTGGTACCAGAGGAGTTTGAGGAAGAAATTGGAGTTCAACAGATTGTGATTCATCGGGAGTATCGACCCGACCGCAGTGATTATGACATAGCCCTGGTTAGATTACAAGGACCAGAAGAGCAATGTGCCAGATTCAGCAGCCATGTTTTGCCAGCCTGTTTACCACTCTGGAGAGAGAGGCCACAGAAAACAGCATCCAACTGTTACATAACAGGATGGGGTGACACAG
Seq C2 exon
GACGAGCCTATTCAAGAACACTACAACAAGCAGCCATTCCCTTACTTCCTAAAAGGTTTTGTGAAGAACGTTATAAGGGTCGGTTTACAGGGAGAATGCTTTGTGCTGGAAACCTCCATGAACACAAACGCGTGGACAGCTGCCAGGGAGACAGCGGAGGACCACTCATGTGTGAACGGCCCGGAGAGAGCTGGGTGGTGTATGGGGTGACCTCCTGGGGGTATGGCTGTGGAGTCAAGGATTCTCCTGGTGTTTATACCAAAGTCTCAGCCTTTGTACCTTGGATAAAAAGTGTCACCAAACTGTAATTCTTCATGGAAACTTCAAAGCAGCATTTAAACAAATGGAAAACTTTGAACCCCCACTATTAGCACTCAGCAGAGATGACAACAAATGGCAAGATCTGTTTTTGCTTTGTGTTGTGGTAAAAAATTGTGTACCCCCTGCTGCTTTTGAGAAATTTGTGAACATTTTCAGAGGCCTCAGTGTAGTGGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099-'15-19,'15-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.2=100)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCTCCGGCTGAAGTCAT
R:
ATACACCACCCAGCTCTCTCC
Band lengths:
306-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)