DreEX0058750 @ danRer10
Exon Skipping
Gene
ENSDARG00000061830 | prss12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:ZFIN;Acc:ZDB-GENE-090313-45]
Coordinates
chr1:19424620-19448907:+
Coord C1 exon
chr1:19424620-19424742
Coord A exon
chr1:19436451-19436749
Coord C2 exon
chr1:19445403-19448907
Length
299 bp
Sequences
Splice sites
3' ss Seq
TGGTATATGCTTTTTCTCAGGTA
3' ss Score
7.98
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
TGGTGGCTGGCCGTGGCAGGCAGCTGTGCGTTTACGGGGTTCTCAGGCAGATGGACGCTTGGTATGTGGAGCTACTTTGATCAGCAGCTGCTGGATCCTCACTTCAGCTCACTGCTTTAAGAG
Seq A exon
GTATGGGAACAGCACAGGGCTGTATAAAGTTCGTGTTGGTGATTATCACTCTCTGGTCCCTGAGGAGTATGAGGAAGAGTATGCCGTGGAGAAGATCGTCCTTCACCCACGCTACCATGCAGACAGTAGTGACTATGACCTGGCACTTCTGCGTGTTTCTGGACACAGAGCTCACAGGGGTGTCACGGGCCAATGCGTCACACTGAGCCGATCAGTGCTGCCCGCTTGTTTACCAGTGCGGAGAGAGAAAGTGCCAAAGGGCATTGCCAACTGCTACATCACAGGCTGGGGAGATACAG
Seq C2 exon
GTCGTGCATATTCCAAAACTCTCCAGCAGGCCTCCATTTCTGTGTTGAGCAAGCGTCAGTGTGAGCAGCGCTACTCGGAGCAGTTCACCAATCGTATGCTGTGCGCCGGCTCGTCCCATGATGCCCAGCGTGTGGACTCCTGCCGTGGCGATAGCGGTGGTCCGCTGGTGTGCGAGAGGCCAAGCGGGAGCTGGGTTGTTTATGGGGTCACATCATGGGGTCACGCGTGTCGCCTGCAGGAAGCACCCGGGGTATACACCAAAGTCTCCGCCTTTGTGCCCTGGATTAAGAAAGTTATTGGCCAGTAGAAAATTATGGTGAACAAAATAGTATTCTGACTTTGTGGGCATAAACAATGAAGCACATTTTAGATAATATTTTGAAAACTATTTCTTAACACTAGCTGAAATTACCTTTTAAACAAGTCTTAAATGCCAGAGAGAAAGGCTACGCTTTGCTTTAAAGGGGCTATATGTACGCATTTTCATGTATTTTATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061830_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.7=100)
A:
PF0008921=Trypsin=FE(40.8=100)
C2:
PF0008921=Trypsin=PD(38.8=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACGGGGTTCTCAGGCAG
R:
CCCATAAACAACCCAGCTCCC
Band lengths:
300-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]