GgaEX6035081 @ galGal4
Exon Skipping
Gene
ENSGALG00000012004 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:HGNC:9477]
Coordinates
chr4:54463805-54470738:+
Coord C1 exon
chr4:54463805-54463927
Coord A exon
chr4:54468112-54468392
Coord C2 exon
chr4:54470319-54470738
Length
281 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAATCTCAATCTCAGGTA
3' ss Score
8.73
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGCGGTTGGCCATGGCAGGTTGCACTCCGATTTAAATCGTCTCATGGAGATGGAAGACTCTTGTGTGGTGCTACTCTCATTAGTAGCTGCTGGGTCCTCACTGCTGCACACTGCTTTAAAAG
Seq A exon
GTATGGCAATAACACTAGGAACTATGCCGTGCGAGTTGGAGATTATCATACGCTGGTACCAGAAGAGTATGAGGAAGAAATTGGAGTCCAAGAGATTGTGATGCACAAGGAGTACAGGCCTGACAGTAGTGACTATGACATTGCACTAGTGAGGCTACAGGGGCCAGAGGAACAGTGTGCCAGATTCAGTACCCATGTCTTACCTGCCTGCCTGCCCTTAAGGAGAGAGAGACCACAGAAAACTGCTCCTAACTGTTACATCACTGGATGGGGTGACACAG
Seq C2 exon
GAAGGGCTTATTCAAGAACACTACAACAAGCTGCCATCCCCTTACTTCCCAAGAGGGTATGTGAGGAGCGTTATAAAAGAAGATTCACAGGAAGAATGCTCTGTGCTGGAAACATCCAGGAACAGAAACGCATCGATAGCTGTCAAGGGGACAGTGGAGGACCACTGATGTGTGAACGTCCAGGGGAAAGCTGGGTTGTGTACGGTGTGACCTCCTGGGGCTATGGCTGCGGAATGAAAGACTCTCCAGGTGTCTACACAAAAGTTTCATCTTTTGTACCCTGGATAAAGAGTGTGACCAAACTATGAATGTGCTTAATCCAAACCAAACTTTATTAACACCGTGAATAAAGCAGGACAGCTTGAACAGCACAGATTGCACAGCTGGGGCCCACTGCGAGTGGAAACAGGCACATTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'17-20,'17-18,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.2=100)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTAGCTGCTGGGTCCTCAC
R:
CCTGGAGAGTCTTTCATTCCGC
Band lengths:
292-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]