MmuEX0037435 @ mm9
Exon Skipping
Gene
ENSMUSG00000027978 | Prss12
Description
protease, serine, 12 neurotrypsin (motopsin) [Source:MGI Symbol;Acc:MGI:1100881]
Coordinates
chr3:123194420-123209520:+
Coord C1 exon
chr3:123194420-123194542
Coord A exon
chr3:123208196-123208476
Coord C2 exon
chr3:123209138-123209520
Length
281 bp
Sequences
Splice sites
3' ss Seq
ATTTGGCTCTCTCCCTTCAGGTA
3' ss Score
12.65
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGGTGCCTGGCCTTGGCAGGCTTCCCTCAGGCTGAGGTCGGCCCATGGAGACGGCAGGCTGCTTTGTGGAGCTACCCTTCTGAGTAGCTGCTGGGTCCTGACAGCTGCACACTGCTTCAAAAG
Seq A exon
GTACGGAAACAACTCGAGGAGCTATGCAGTTCGAGTTGGGGATTATCATACTCTGGTACCAGAGGAGTTTGAACAAGAAATAGGGGTTCAACAGATTGTGATTCACAGGAACTACAGGCCAGACAGAAGCGACTATGACATTGCCCTGGTTAGATTGCAAGGACCAGGGGAGCAATGTGCCAGACTAAGCACCCACGTTTTGCCAGCCTGTTTACCTCTATGGAGAGAGAGGCCACAGAAAACAGCCTCCAACTGTCACATAACAGGATGGGGAGACACAG
Seq C2 exon
GTCGTGCCTACTCAAGAACTCTACAACAAGCTGCTGTGCCTCTGTTACCCAAGAGGTTTTGTAAAGAGAGGTACAAGGGACTATTTACTGGGAGAATGCTCTGTGCTGGGAACCTCCAAGAAGACAACCGTGTGGACAGCTGCCAGGGAGACAGTGGAGGACCACTCATGTGTGAAAAGCCTGATGAGTCCTGGGTTGTGTATGGGGTGACTTCCTGGGGGTATGGATGTGGAGTCAAAGACACTCCTGGAGTTTATACCAGAGTCCCCGCCTTTGTACCTTGGATAAAAAGTGTCACCAGTCTGTAACTTATGGAAAGCTCAAGAAAATAGTAAAACAGTAACCATTCAGTCTTCATACTTGGCACCATGCCAGAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027978-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(17.2=100)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=PD(39.7=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTGTGGAGCTACCCTT
R:
ACTCCACATCCATACCCCCAG
Band lengths:
300-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: