BtaEX0028693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:7999848-8017751:+
Coord C1 exon
chr6:7999848-7999926
Coord A exon
chr6:8000797-8000919
Coord C2 exon
chr6:8017471-8017751
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTACTTTCTTCTTAGGGG
3' ss Score
8.15
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AGTCCCTCTCATCTGTTTGTGGTTTGAGATTATTGCCCCGTCGGCAGAAGCGGATCATTGGTGGGAAGAATTCTTTAAG
Seq A exon
GGGCAGTTGGCCTTGGCAAGTATCCCTCCGGCTGAAGTCATCCCATGGAGACGGTAGGCTCCTTTGTGGGGCCACGCTCCTGAGTAGCTGCTGGGTCCTTACAGCAGCACACTGCTTCAAGAG
Seq C2 exon
GTACGGTAACAGTACTAGGAACTACGTGGTTCGGGTTGGGGATTATCACACGCTGGTGCCGGAGGAGTTCGAAGAAGAGATCAGAGTTGAGCAGATCGTAACCCACCGGCTCTACCGCCCGCACAGCAATGACTATGACATCGCCCTGGTTAGGTTACAAGGACCAGAGGAGCAGTGTGCCAGGCTCAGCAGCCACGTTCTGCCTGCCTGCTTGCCGCGCTGGAGAGAGAGGCCACAGAAGAGAGCACACAACTGCTACGTAACGGGATGGGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705_MULTIEX2-4/5=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(3.3=29.6)
A:
PF0008921=Trypsin=FE(17.2=100)
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTCTCATCTGTTTGTGGT
R:
CACTGCTCCTCTGGTCCTTGT
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development