HsaEX0050472 @ hg19
Exon Skipping
Gene
ENSG00000164099 | PRSS12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:9477]
Coordinates
chr4:119203986-119217011:-
Coord C1 exon
chr4:119216933-119217011
Coord A exon
chr4:119216094-119216216
Coord C2 exon
chr4:119203986-119204266
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTAGCTCATTTTCTTCTTAGGGG
3' ss Score
5.98
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AGTCCCTCTCATCTGTTTGTGGCTTGAGATTACTGCACCGTCGGCAGAAGCGGATCATTGGTGGGAAAAATTCTTTAAG
Seq A exon
GGGTGGTTGGCCTTGGCAGGTTTCCCTCCGGCTGAAGTCATCCCATGGAGATGGCAGGCTCCTCTGCGGGGCTACGCTCCTGAGTAGCTGCTGGGTCCTCACAGCAGCACACTGTTTCAAGAG
Seq C2 exon
GTATGGCAACAGCACTAGGAGCTATGCTGTTAGGGTTGGAGATTATCATACTCTGGTACCAGAGGAGTTTGAGGAAGAAATTGGAGTTCAACAGATTGTGATTCATCGGGAGTATCGACCCGACCGCAGTGATTATGACATAGCCCTGGTTAGATTACAAGGACCAGAAGAGCAATGTGCCAGATTCAGCAGCCATGTTTTGCCAGCCTGTTTACCACTCTGGAGAGAGAGGCCACAGAAAACAGCATCCAACTGTTACATAACAGGATGGGGTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(3.3=29.6)
A:
PF0008921=Trypsin=FE(17.2=100)
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGAGATTACTGCACCGT
R:
TGCTGAATCTGGCACATTGCT
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)