MmuEX6073904 @ mm9
Exon Skipping
Gene
ENSMUSG00000027978 | Prss12
Description
protease, serine, 12 neurotrypsin (motopsin) [Source:MGI Symbol;Acc:MGI:1100881]
Coordinates
chr3:123192474-123208476:+
Coord C1 exon
chr3:123192474-123192552
Coord A exon
chr3:123194420-123194542
Coord C2 exon
chr3:123208196-123208476
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAACATACGCTGACTTCCAGGGG
3' ss Score
3.51
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGATGCTCTCATCTGGATGTGGACTGAGGTTACTGCACCGTCGGCAGAAACGGATCATTGGTGGGAACAATTCTTTAAG
Seq A exon
GGGTGCCTGGCCTTGGCAGGCTTCCCTCAGGCTGAGGTCGGCCCATGGAGACGGCAGGCTGCTTTGTGGAGCTACCCTTCTGAGTAGCTGCTGGGTCCTGACAGCTGCACACTGCTTCAAAAG
Seq C2 exon
GTACGGAAACAACTCGAGGAGCTATGCAGTTCGAGTTGGGGATTATCATACTCTGGTACCAGAGGAGTTTGAACAAGAAATAGGGGTTCAACAGATTGTGATTCACAGGAACTACAGGCCAGACAGAAGCGACTATGACATTGCCCTGGTTAGATTGCAAGGACCAGGGGAGCAATGTGCCAGACTAAGCACCCACGTTTTGCCAGCCTGTTTACCTCTATGGAGAGAGAGGCCACAGAAAACAGCCTCCAACTGTCACATAACAGGATGGGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027978-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(3.3=29.6)
A:
PF0008921=Trypsin=FE(17.2=100)
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAGAAACGGATCATTGG
R:
GGTAAACAGGCTGGCAAAACG
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: