DreEX0058749 @ danRer10
Exon Skipping
Gene
ENSDARG00000061830 | prss12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:ZFIN;Acc:ZDB-GENE-090313-45]
Coordinates
chr1:19413530-19436749:+
Coord C1 exon
chr1:19413530-19413671
Coord A exon
chr1:19424620-19424742
Coord C2 exon
chr1:19436451-19436749
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTATGGCGTAGTGG
3' ss Score
5.09
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTTACCTGTGAGGCTGGTGGGCGGAGAGAATGAGAGAGAGGGGCGTGTAGAGATCCTGGTGGGTGGCCAGTGGGGGACGGTGTGCGATGATGGATGGACGGATCGGGACGCAGAAGTGGTGTGCAGACAGCTGGGTTACAG
Seq A exon
TGGTGGCTGGCCGTGGCAGGCAGCTGTGCGTTTACGGGGTTCTCAGGCAGATGGACGCTTGGTATGTGGAGCTACTTTGATCAGCAGCTGCTGGATCCTCACTTCAGCTCACTGCTTTAAGAG
Seq C2 exon
GTATGGGAACAGCACAGGGCTGTATAAAGTTCGTGTTGGTGATTATCACTCTCTGGTCCCTGAGGAGTATGAGGAAGAGTATGCCGTGGAGAAGATCGTCCTTCACCCACGCTACCATGCAGACAGTAGTGACTATGACCTGGCACTTCTGCGTGTTTCTGGACACAGAGCTCACAGGGGTGTCACGGGCCAATGCGTCACACTGAGCCGATCAGTGCTGCCCGCTTGTTTACCAGTGCGGAGAGAGAAAGTGCCAAAGGGCATTGCCAACTGCTACATCACAGGCTGGGGAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061830_MULTIEX2-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0008921=Trypsin=FE(16.7=100)
C2:
PF0008921=Trypsin=FE(40.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACCTGTGAGGCTGGTGG
R:
CGTGGGTGAAGGACGATCTTC
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]