GgaEX6035082 @ galGal3
Exon Skipping
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56598320-56604997:+
Coord C1 exon
chr4:56598320-56598398
Coord A exon
chr4:56600410-56600532
Coord C2 exon
chr4:56604717-56604997
Length
123 bp
Sequences
Splice sites
3' ss Seq
AATGTCTATGCTCTCTGTAGGGG
3' ss Score
7.98
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATTCTCTTGCTTCTGTTTGTGGATTGAGGTTACTACATCGTCGACAAAAGCGAATAATTGGTGGGAAAAATTCTTTACG
Seq A exon
GGGCGGTTGGCCATGGCAGGTTGCACTCCGATTTAAATCGTCTCATGGAGATGGAAGACTCTTGTGTGGTGCTACTCTCATTAGTAGCTGCTGGGTCCTCACTGCTGCACACTGCTTTAAAAG
Seq C2 exon
GTATGGCAATAACACTAGGAACTATGCCGTGCGAGTTGGAGATTATCATACGCTGGTACCAGAAGAGTATGAGGAAGAAATTGGAGTCCAAGAGATTGTGATGCACAAGGAGTACAGGCCTGACAGTAGTGACTATGACATTGCACTAGTGAGGCTACAGGGGCCAGAGGAACAGTGTGCCAGATTCAGTACCCATGTCTTACCTGCCTGCCTGCCCTTAAGGAGAGAGAGACCACAGAAAACTGCTCCTAACTGTTACATCACTGGATGGGGTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(4.9=29.6)
A:
PF0008921=Trypsin=FE(25.0=100)
C2:
PF0008921=Trypsin=FE(57.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACATCGTCGACAAAAGCGA
R:
TGGGTACTGAATCTGGCACAC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]