DreEX6000680 @ danRer10
Exon Skipping
Gene
ENSDARG00000018770 | SSC5D (1 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5475773-5491167:-
Coord C1 exon
chr4:5491110-5491167
Coord A exon
chr4:5490695-5491024
Coord C2 exon
chr4:5475773-5476102
Length
330 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTGTTTTTATTTATTAG
3' ss Score
-3.75
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGTGCATTGGCATTGGATTACTGTACATATTCTCAAGGTGCTGGAGTCATTTGTGAAG
Seq A exon
TAGATATAGCCTCTAAAAGGGTTGACCTGAGGTTGGCAAATGGCCGTGACTCTTGTTCTGGACGAGTTGAGGTTTTCTATAATGGCTCATGGGGAACAGTGAGTGATGATGGCTGGGATCTGTCAGACGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGGAATGTGATTGAGGCAAAGAGCGCTGCTTATTTTGGACAAGGAACAGGACCGGTATGGTTGAACACAGTGCAATGCAATGGGACTGAGAACTCGTTGGTGAACTGTACATCCTCTCAATGGGGAATACAGAGTGGTAACCATTCAAAAGACTCCGGAGTCATCTGTAACA
Seq C2 exon
GGAATGGACTTCCAGTGGAAGCATCTCTGAGATTGATGAATGGTGGGAACTCTTGCTCTGGACGAGTGGAGGTTTTCTATAATGGCGCATGGGGAACGGTGTGTGATGATTCCTGGGATTTGTCAGACGCTGCGGTGGTGTGTAGAGAGATCGGATGTGGGAATGCAACTGAGGCAAAGAGCAATGCTTATTTTGGTCCAGGAACTGGATCAATATGGATGGATGATGTGCTTTGCATTGGCAGCGAGTCCTCTCTGGTAGACTGTAAGAGAAGCGCGTGGGGAATACATAACTGTGTGCATGGTGAAGATGCTGGAGTCATTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018770-'0-3,'0-0,1-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGGAGTCATTTGTGA
R:
ACTCCAGCATCTTCACCATGC
Band lengths:
342-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]