DreEX6000983 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8920856-8936399:-
Coord C1 exon
chr4:8936283-8936399
Coord A exon
chr4:8922914-8923036
Coord C2 exon
chr4:8920856-8920972
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGTCTTCCTGTTCTCTGCAGATA
3' ss Score
11.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAG
Seq A exon
ATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAG
Seq C2 exon
ATATTGACGAGTGCTCCTTTGAGAGGACGTGTGATCACGTCTGCATCAACTACCCTGGTAGCTTTGAGTGTGTTTGCCACAAAGGCTACAGTCTCTATGGCTTCACACACTGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGCGGTGAACAACG
R:
CGCAGTGTGTGAAGCCATAGA
Band lengths:
229-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]