DreEX6001116 @ danRer10
Exon Skipping
Gene
ENSDARG00000058030 | hspa14
Description
heat shock protein 14 [Source:ZFIN;Acc:ZDB-GENE-041210-73]
Coordinates
chr4:9593034-9595793:+
Coord C1 exon
chr4:9593034-9593124
Coord A exon
chr4:9594183-9594287
Coord C2 exon
chr4:9595632-9595793
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAGTCTGTTGTGTTTTGTAGGCA
3' ss Score
7.88
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
AAACGGCCCAGTCAGCCTTGGGTTCGGACGTGAAAGATGCTGTCATAACTGTGCCTTTTGAGTTTGACGAGATGCAGAAGAATGCACTCAG
Seq A exon
GCAAGCTGCAGAAAGTGCCGGCTTCAATGTGTTACGGCTGATTCACGAACCCTCCGCTGCTCTTCTAGCTTACGACATCGGCCAGGACTCACCGCTGGGGAAAAG
Seq C2 exon
TCATGTTCTGGTGTATAAACTGGGAGGCACATCCCTCAGCGTCACCGTGCTGGAGGTGAACAGCGGAGTTTACCGTGTTCTCGCCACACAGACGGACCACCAGACTGGAGGAGAGAGCTTCACACAGGAGCTAGCTCAACACCTCGCCGCAGAGTTTAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058030-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.0=100)
A:
PF0001215=HSP70=FE(7.0=100)
C2:
PF0001215=HSP70=FE(10.8=100),PF0029717=Ribosomal_L3=PU(58.6=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGCCTTGGGTTCGGA
R:
TTCTTAAACTCTGCGGCGAGG
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]