GgaEX1029210 @ galGal4
Exon Skipping
Gene
ENSGALG00000006643 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr1:7308130-7309476:+
Coord C1 exon
chr1:7308130-7308220
Coord A exon
chr1:7308748-7308852
Coord C2 exon
chr1:7309315-7309476
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTGTTATGTGTTATCACAGGGA
3' ss Score
6.64
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTGCTCAGTCTGCATTGGGTTCAGATGTAAATGACGTTGTTATCACTGTACCATTTGATTTTGGAGAGAATCAGAAAAATGCCCTTGG
Seq A exon
GGAAGCAGCTGCAGCTGCTGGTTTTAATGTTATGAGGTTAATTCATGAACCCTCTGCAGCTCTCCTGGCTTACGGAATTGGCCAAGATTCACCCACTGGGAAAAG
Seq C2 exon
CAACGTGTTGGTTTATAAGCTTGGTGGAACATCGCTGTCTATCACAGTTATAGAAGTAAACAGTGGAATATATCGTGTGCTTGCTACAGACACAGATGATGGCATTGGCGGAGTGTACTTCACAGAAGCTTTAGCACAACATTTAGCATCTGAATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006643_MULTIEX3-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.0=100)
A:
PF0001215=HSP70=FE(10.7=100)
C2:
PF0001215=HSP70=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCAGTCTGCATTGGGTT
R:
TGGAATTCAGATGCTAAATGTTGTGC
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]