HsaEX0030618 @ hg19
Exon Skipping
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14891720-14894530:+
Coord C1 exon
chr10:14891720-14891810
Coord A exon
chr10:14893218-14893322
Coord C2 exon
chr10:14894369-14894530
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGAAAGCAAATTGTTCACAGAGA
3' ss Score
1.07
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AAACGGCACATTCTGTATTGGGCTCAGATGCAAATGATGTAGTTATTACTGTCCCGTTTGATTTTGGAGAAAAGCAAAAAAATGCTCTTGG
Seq A exon
AGAAGCAGCTAGAGCTGCTGGATTTAATGTTTTGCGATTAATTCACGAACCGTCTGCAGCTCTTCTTGCTTATGGAATTGGACAAGACTCCCCTACTGGAAAAAG
Seq C2 exon
CAATATTTTGGTGTTTAAGCTTGGAGGAACATCCTTATCTCTCAGCGTCATGGAAGTTAACAGTGGAATATATCGGGTTCTTTCAACAAACACTGATGATAACATCGGTGGTGCACATTTCACAGAAACCTTAGCACAGTATCTAGCTTCTGAGTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(5.9=100)
A:
PF0001215=HSP70=FE(6.9=100)
C2:
PF0001215=HSP70=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACATTCTGTATTGGGCT
R:
GGAACTCAGAAGCTAGATACTGTGC
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)