DreEX6001358 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10731081-10731708:+
Coord C1 exon
chr4:10731081-10731277
Coord A exon
chr4:10731354-10731484
Coord C2 exon
chr4:10731575-10731708
Length
131 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGCTGTTTTCCACAGGCT
3' ss Score
9.21
5' ss Seq
GGAGTAGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
CAATCAACCCGTGCTTGAGGAGTGTGTGCCATGCGAATGCAGTGTGTGCGCATACGGGACCGAACAAGCATGTCTGCACATGTACAGAAGGCTATAGTGGCGACGGTCGAGTCTGCATGCCCATTGACCCATGCCAGACTAATCTAGGCAACTGCACATCTGGCTCTACCCGCTGTGTGTATGACGGTCCTGGAAAA
Seq A exon
GCTCACTGTGAGTGTTTGGAGGGATTCGAGAAGTTTGTTGAAGGGCAGGGCTGCAGTATTATAGATCTGTGCAAACCAGACTCCTGCCATAAATACGCCACCTGTGCCACAGCTGAACCAGGAACAGTGGA
Seq C2 exon
ATGTAACTGCCGCGAAGGTTTCATTGGGAATGGAAAAATATGCTTTGGGGACATCATTCAACAGCTGAATGAAATGAATTCGAAGCCAGGAGGAAAATGGACGGGTCAGCTCTCCAGTGCCATCACACTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'8-10,'8-9,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=50.0)
A:
PF129472=EGF_3=PU(57.1=45.5)
C2:
PF129472=EGF_3=PD(40.0=30.4),PF0246917=Fasciclin=PU(8.1=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGGGACCGAACAAGCATG
R:
TGACCCGTCCATTTTCCTCCT
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]