MmuEX6050432 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86422929-86432124:-
Coord C1 exon
chr10:86431928-86432124
Coord A exon
chr10:86430365-86430498
Coord C2 exon
chr10:86422929-86423062
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCATCTCTAAAAGTCT
3' ss Score
5.01
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CCATCAACCCATGTTTAAAAAACGTCTGCCACCCTCACGCAAGTTGTTCCTACCTGGGACCAAATCGGCACAGTTGTGTATGCCAAAAAGGCTACCAAGGAGATGGTCAAGTGTGTCTGCCAGTGGACCCCTGCCAAACCAGCTATGGAAACTGCCCTACAAAGTCTACGGTGTGCAGATATGATGGGCCTGGACAG
Seq A exon
TCTCACTGCGAGTGTAAAGAACATTACCGAAATTTTGTACCTGGAGTGGGGTGCAGTATGACGGACATCTGTGAATCAAAAAACCCATGTCATAAGAATGCGAACTGCAGCACAGTCTCACCAGGCCAAACCCA
Seq C2 exon
ATGCACTTGCCAGAAAGGTTATGTGGGTGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGAATGTGGCAAGGACAGCTGACTTCCTTCATCTCAATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'9-11,'9-9,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=53.0)
A:
PF129472=EGF_3=PU(58.3=46.7)
C2:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACCTGGGACCAAATCGG
R:
GCCACATTCCTCTGGGTTCAG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: