GgaEX6002355 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54983528-54989194:-
Coord C1 exon
chr1:54988998-54989194
Coord A exon
chr1:54987810-54987943
Coord C2 exon
chr1:54983528-54983661
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTCCCATCCCTTTGATGCAGTCC
3' ss Score
6.84
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTATCAATCCATGCTTTACAAAAGTCTGCGATCCTAATGCCAACTGCACTTACCTTGGACCAAATCGTCACAAATGTACCTGTCGAGAAGGTTACAGAGGGGATGGTCAAGTCTGCTTACCTATAGACCCTTGCCAAGCACTATATGGGAATTGCCCTGCACAGTCTACCATTTGCATATATGACGGCCCAGGAAAG
Seq A exon
TCCCACTGTGAGTGCAAGGAGCATTACACAAACTTTGTTCCTGGGAAAGGATGCAGCATGACAGACATCTGTGAAACAAACAACACATGCCACAAAAAAGCTAAATGCTCAATGGTTGCTCCAGGACAGATTAC
Seq C2 exon
GTGTACATGCCAGAGGGGCTCTGTGGGGAATGGGTTTGTGTGCTATGGAAACATCATGGAGCGCCTCCAAGACCTGAACACAGAAGCAGGAGGACGGTGGCAAGGCAAGCTAACATCTGCCCTAGCACTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'8-12,'8-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=50.0)
A:
PF129472=EGF_3=PU(58.3=46.7)
C2:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(7.9=21.7)
Main Skipping Isoform:
ENSGALT00000020806fB12471
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACTGCACTTACCTTGGA
R:
CGTCCTCCTGCTTCTGTGTTC
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]