DreEX6001361 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10728568-10729008:+
Coord C1 exon
chr4:10728568-10728653
Coord A exon
chr4:10728752-10728818
Coord C2 exon
chr4:10728913-10729008
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCATTTTTTGCAGTCT
3' ss Score
8.8
5' ss Seq
ATGGTAGAG
5' ss Score
1
Exon sequences
Seq C1 exon
AGTGTCCAGGATCAGCATCGACGCCATGCAGCAATAATGGAGTCTGCTCTGATGGTATAGCAGGCAATGGGACTTGCACTTGCGCA
Seq A exon
TCTGGTTTTACAGGAGCAGCTTGCGAGGAATGCAAAACAGACTTATATGGACCCACTTGCAGTAATG
Seq C2 exon
TGTGTCGTTGCAAGAATGGACTGTGTAGCAGCGGTTTGAAAGGAACAGGAGAGTGCACATGTTTTTCTGGGTACACCGGCCTAGACTGCGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(78.8=89.7)
A:
PF0000822=EGF=PD(15.2=21.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCCAGGATCAGCATCGA
R:
TAGGCCGGTGTACCCAGAAAA
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]