GgaEX6002353 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56886408-56890118:-
Coord C1 exon
chr1:56890033-56890118
Coord A exon
chr1:56888768-56888837
Coord C2 exon
chr1:56886408-56886503
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTTTGTAATTCCAGAAA
3' ss Score
7.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATGTCCAGGAGGAGCTGCATCGCCATGCAATGGGAGGGGACACTGTTCCCAGGGCTTGAATGGAAATGGAACATGCACTTGTCAG
Seq A exon
AAAGGATTTGCTGGGACAGCCTGTGAAAAATGTGCTGAAGATCATTTATTTGGTCCTCAGTGCACATCAG
Seq C2 exon
TTTGCAACTGTGTTCATGGAGTATGCAACAGTGGAATTACAGGAGATGGAAGATGCACTTGCTTGTCTGGATACCAAGGTCTCAGCTGTGATCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCAGGAGGAGCTGCAT
R:
ACAGCTGAGACCTTGGTATCCA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]