GgaEX6002353 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54991549-54995259:-
Coord C1 exon
chr1:54995174-54995259
Coord A exon
chr1:54993909-54993978
Coord C2 exon
chr1:54991549-54991644
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTTTGTAATTCCAGAAA
3' ss Score
7.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATGTCCAGGAGGAGCTGCATCGCCATGCAATGGGAGGGGACACTGTTCCCAGGGCTTGAATGGAAATGGAACATGCACTTGTCAG
Seq A exon
AAAGGATTTGCTGGGACAGCCTGTGAAAAATGTGCTGAAGATCATTTATTTGGTCCTCAGTGCACATCAG
Seq C2 exon
TTTGCAACTGTGTTCATGGAGTATGCAACAGTGGAATTACAGGAGATGGAAGATGCACTTGCTTGTCTGGATACCAAGGTCTCAGCTGTGATCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(75.0=93.1)
A:
PF079748=EGF_2=PD(19.4=29.2)
C2:
PF129472=EGF_3=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCAGGAGGAGCTGCAT
R:
ACAGCTGAGACCTTGGTATCCA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]