DreEX6001392 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10953936-10955229:-
Coord C1 exon
chr4:10954915-10955229
Coord A exon
chr4:10954423-10954737
Coord C2 exon
chr4:10953936-10954250
Length
315 bp
Sequences
Splice sites
3' ss Seq
TATTAATATAATTCAAACAGATC
3' ss Score
5.3
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGCAAGGAATGTGAGGTTGGTTGATGGTAACAGTCGCTGTGCTGGTAGAGTGGAGGTTTATCATAGAGGTCAGTGGGGAACAGTGTGTGAAGATGACTGGGATTTGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCACTTTGGACCAGGATCAGGACCAATCTGGATGAGTACTTTAAGTTGTTATGGGATGGAATCTACATTAAAAAGCTGTGGAGCGGCAGGATGGGGCCAACACACCTGTGGTCATAATGATGATGCTGGAGTCATCTGCTCAG
Seq A exon
ATCATAAACAGTCCAGACTTATTGACGGATCTCATCTGTGCTCTGGGAGGTTAGAGATCCTTCATGATCAGACGTGGATGTCAGTGTGTGATGCTGCATTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGCTCAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGATGAGACTCGCATTTCATTCTGTTTAATGTCACAATCACACAAAAACAATTGCACAAATGCCAGTAGAGTAAGCCTGATATGTTCAG
Seq C2 exon
GTTACACGGATTTTCGACTGGTCAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATTTCAGTAAATGGGGCACAGTGTGTGATGCATGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGACGAGATGTTGGAGTCATCTGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5),PF0053013=SRCR=PU(0.1=0.0)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=97.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGATTTGGCTGATGCTG
R:
TTACAGAGGACACTGGCAGCT
Band lengths:
349-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]