BtaEX6024204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102254977-102268356:+
Coord C1 exon
chr5:102254977-102255297
Coord A exon
chr5:102267630-102267944
Coord C2 exon
chr5:102268042-102268356
Length
315 bp
Sequences
Splice sites
3' ss Seq
CACAAAATATTCTTTTTCAGCCC
3' ss Score
7.42
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ATGGATCAGATCTCGAACTGAGACTCAAAGGTGGAGGTAGCCGCTGTGCTGGGACAGTGGAGGTGGAAATTCAGAAACTGATAGGGAAAGTGTGTGACAGAAGCTGGGGACTGAAAGAAGCTGACGTGGTTTGCAAGCAGCTGGGATGTGGATCTGCGCTCAGAACATCCTATCAAGTTTATTCTAAAATTCAGGCAACGAACACATGGCTGTTTTTAAACAACTGCAATGGAAATGAGACTTCTATCTGGGACTGCAAGAACTGGCAATGGGGTGGGCTTAGTTGTGAACACTATCATGAAGCCAAAGTTACTTGCTCAG
Seq A exon
CCCACAGGGAACCCAGACTAGTTGGAGGGGACATTCCTTGCTCCGGTCGTGTTGAAGTGAAACATGGCGACACTTGGGGCACCATCTGTGATTCTGACTTCTCTCTGGAATCGGCCAGCGTGCTATGCAGGGAATTAGAGTGCGGCAGCGTTGTCTCCATCCTGGGGGGAGCTCACTTTGGAGAAGGAAATGGACAGATCTGGGCTGAAGAATTCCAGTGTGAAGGCAACGAGTCCCATCTTTCACTCTGCCCCGTTGCACCCCGCCTGGATGGGACGTGTAGCCACAGCAAGGACATTGGAGTAGTCTGCTCAA
Seq C2 exon
GATACACAGAAGTTCGCTTGGTGGGTGGCAATACCCCATGTGAAGGAAGAGTGGAGGTCAAGATTCTTGGGACCTGGGGACCTCTCTGCAACTCTCACTGGGACATGGAAGATGCTCATGTTTTGTGCCAGCAGCTTAAATGTGGAGTTGCTGCTTCTATCCCAGGAAGAGCACCTTTTGGGAAAGGAAGTGGGCAGCCCTGGAGACACATGTTCCACTGCACTGGGACAGAACAGCACATGGGTGATTGTCCTGTAACTGCTCTGGGTGCATCGCTGTGTCCTGAAGGGCAAGTGGCCTCTGTAATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669-'8-11,'8-8,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTGACGTGGTTTGCA
R:
GCTGCTGGCACAAAACATGAG
Band lengths:
342-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]