RnoEX6015012 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156759884-156764480:+
Coord C1 exon
chr4:156759884-156760210
Coord A exon
chr4:156763754-156764068
Coord C2 exon
chr4:156764166-156764480
Length
315 bp
Sequences
Splice sites
3' ss Seq
AATACTATTGTTTTTTTTAGGCC
3' ss Score
9.08
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
ATGGAGCAGATCTGGAACTTCGACTCGTCGGTGGAGGCAGTCGCTGTGCTGGGATGGTGGAGGTGGAGATTCAGAAGCTGACTGGGAAGGTGTGCAGCCGAGGCTGGACACTGACAGATGCCGACGTGGTTTGCAGACAGCTTGGATGTGGCTCTGCACTTCAAACACAGTCTAAGATCTACTCTAAAACCAAAACTGAGGCAACAAATACGTGGCTCTTTCCTGGCTCTTGCAGTGGAAATGAAACTTCTCTTTGGCAATGTAAAAACTGGCAGTGGGGCGGCCTTTCCTGTGATCATTTCGAAGAAGCCCAAGTTACTTGCTCAG
Seq A exon
GCCACAGGAAACCCAGACTGGTTGGAGGAGAAATCCCATGTTCCGGTCGTGTGGAAGTGAAACACGGAGACACGTGGGGTTCCGTCTGTGATTTCGACTTGTCTCTGGAAGCTGCCGGCGTGGTGTGCAGGGAATTACAATGTGGAACAGTCGTCTCTATCCTAGGGGGAGCACATTTTGGAGAAGGAAGCGGACAGATCTGGGGTGAAGAATTCCAGTGTAGTGGAGATGAGTCCCATCTTTCTCTGTGCTCGGTGGCGCCCCCACTGGACAGAACTTGTAGCCACAGCAGGGATGTCAGCATAGTCTGCTCAC
Seq C2 exon
GATACATAGATATCCGTCTGGCAGATGGCAAGTCCTCCTGTGAGGGAAGAGTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGCTCTCACTGGGACATAGAAGATGCTCATGTCTTATGTCAGCAGCTTAAGTGTGGAGTTGCCCTTTCTACTCCAGGAGGAGCACATTTTGGGAAAGGAGCCGGTCAGGTCTGGAGGCACAAGTTCCACTGCACTGGAACTGAGGAGCATATAGGGGATTGCCCTATGACTGCTCTGGGTACACCGATGTGTTCTGACGGACAGGTAGCCTCTGTAATTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.9)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGATGTGGCTCTGCACTT
R:
CCTCCTGGAGTAGAAAGGGCA
Band lengths:
356-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]