GgaEX7000770 @ galGal4
Exon Skipping
Gene
ENSGALG00000014720 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr1:77270306-77276224:-
Coord C1 exon
chr1:77275918-77276224
Coord A exon
chr1:77272467-77272775
Coord C2 exon
chr1:77270306-77270620
Length
309 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCCCTACCACCTAGGTT
3' ss Score
8.94
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAATTGAAGCTGGTAAATGGAACTGGCCCCTGCTCTGGGAGAGTGGAAGTAAAACATAAGGATCAGTGGGGAACTGTGTGTGATGGTGACTGGAACACAGAAGATGCTGAGGTTGTTTGCAAGCAAGTAGGATGTGGATCTGCTGTTCAGGCCCTTAACCGAGCTCCTTTTGGAGAAGGATCTGGACCTACGTGGTTGTATCGAGTAGAGTGCCGTGGTAATGAATCTGCTCTCTGGAACTGCCCACATACAGGCTGGGGTGGCTTTACCTGCCCTCATTATTTTGATGTTGGAGTGATCTGCTCAG
Seq A exon
GTTTCTCAGGGCTGCATCTGTCTGGAGGGGACACTGCCTGCTCAGGACACCTGAAAATAAAGCAAGATGAAACTTGGACTACAGTATGTTACTCATACATTGATTTTAATGCTGCTTCTGTTATATGCAATGAGCAAAGGTGTGGCCAGGCTGTGGATGTCTTGAGAGGAGCTCACTTTGGAGACAGACATGAATTGATCTGGCAAGAAGTGTTCCACTGTGTGGGGAATGAGACTCACCTTGCACACTGTCCCAGGACGTTGCAGCATAGTAAGGCATGCTCTCATGATGCTTATGTTCTATGTTCAG
Seq C2 exon
GCTATGGTGGATACAGATTGTCAAATGGCAGTACCACATGTTCAGGTAGAGTTGAGCTTCTTCATGGAGGATCATGGGGAACACTCTGTGACTACTTGTGGAATTTTTCAGCTGCCAATGATCTCTGCCAGCATCTAGACTGTGGAGTTGCACTATCAATACCAGATGGACAGTCCTTTGGAAAAGGAAATGGGTCTTTCTGGAATGGTACATTCAGCTGTAAGAAGAATGGCTCATACTCAAGAGACTGTTCTGTGAGTGTCCTAGATCAGAGTGAATGCCCTGCTGGAAATGATGCTCGTGTGATATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
PF0053013=SRCR=WD(100=92.3)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGGCTGGGGTGGCTTTA
R:
TTTCCAGCAGGGCATTCACTC
Band lengths:
352-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]