DreEX6002479 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20470817-20472938:+
Coord C1 exon
chr4:20470817-20471041
Coord A exon
chr4:20471129-20471357
Coord C2 exon
chr4:20472819-20472938
Length
229 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTTTTTGTTGTCAGGTC
3' ss Score
9.82
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTTACTGCAGAGATCTCGTCTACAACACTCTCACAGCTACAAGCTAAGAGACGATCTGAAGAAGGAGGTCTCACAGACATTACAGGCTTTGCAGGAGATGCAACAAAATCGAGAGGAGCAAAAACTAAAACTCAGGAAGCTCACGGACACCGTGAACATGCTAGAGCAAAAAAAGCTACATATCTGCAAGCGCTATGAGGCCGAACTGCAAAAGCGGAATCAAGA
Seq A exon
GTCTGTGCAGCTTGCAGAAAGAGAGAAGGAATGGCGTATTTTCAATGAGAAGCTTGGTGTACTGGTGAAAATGACTGAAAACAGCAACTTGGAGATGTATGACATGGAAGATGAAATCAGAAACTTGAAAATGGAACAGAAAGAAGAAGAAAGACAGAATGATCTGCACAAAAAGCAGTTGTCAAACAAACTAGCTCTGGAGGAAGAGCGTGTCTTATTACAGATACAG
Seq C2 exon
TTGTCTGAGATAAATGACAGAGTGTCTGAGCTGGAAGAGGCTTGTGTGGACGATAACAGAGCAAGAAACCTGAATGGAGAAGATCCATCTCCTGAGGAGCTCATTGAGAAGATTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.403 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACGATCTGAAGAAGGAGGT
R:
TCTTCTCAATGAGCTCCTCAGGA
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]