BtaEX6026945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44158692-44164215:-
Coord C1 exon
chr4:44163991-44164215
Coord A exon
chr4:44162204-44162432
Coord C2 exon
chr4:44158692-44158820
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTATTTGTCCGTAGTGG
3' ss Score
9.37
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AAAGCTACAAAATTCAATGCTGAAGCATGCCAACAACATTACCATCAGAGAAAGCATGCAAAACGATGTGTGCAAAATTGTAGCAAAACTTCAAGAAATGAAAGAGAAGAAAGAAGCCCAGTTAAATAACATCGACAGACTTGCCAATATGATCACAATGATTGAAGAGGAGATGGTACAACTTCGGAAGAAATATGAAAGAGCTGTTCAGCGTCGAAATGAAAG
Seq A exon
TGGTGTTCAGCTGATAGAGCGGGAAGAGGAAGTGTGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAGCTAAATGGAGAAATTGAACTACATGTCCTGGAGGAAAAGATCCGATTCCTGAAACTCAAGATTGCTGAGAAGCAAAGACAGATTCACGTGACCCGGAAATTACTGCCAGTTAAGAGTGCTTTGGATGCTGACTTAGCAGTGCTCCAGATTCAG
Seq C2 exon
TTTTCACAGTGTACAGACAAAATAAAAGACCTGGAGAAAAAGTTTATAAACCCTGAGGGTGAGAACAGAACACGCTTACTTCCAGGGAAAGATATGACTGAGGAAGAAATGATCAAAAAAATGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'17-18,'17-16,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCATGCCAACAACAT
R:
TCCCTGGAAGTAAGCGTGTTC
Band lengths:
295-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]