HsaEX6008587 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76909746-76916243:+
Coord C1 exon
chr7:76909746-76909970
Coord A exon
chr7:76911874-76912102
Coord C2 exon
chr7:76916115-76916243
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGAATTTGACCATAGTGG
3' ss Score
3.98
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGCTACAAAATTCCATGCTGAAACACGCCAACAATGTTACCATCAGAGAGAGCATGCAAAACGATGTGCGCAAAATTGTATCAAAACTTCAGGAAATGAAAGAAAAGAAGGAAGCCCAGTTAAATAACATTGACAGACTTGCCAACACGATCACAATGATCGAAGAGGAGATGGTGCAGCTTCGCAAAAGATACGAAAAAGCTGTTCAGCATCGAAATGAAAG
Seq A exon
TGGCGTTCAGCTGATAGAGCGGGAAGAAGAAATATGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAACTAAATGGAGAAATTGAAATACATCTACTGGAAGAAAAGATCCAATTCCTGAAAATGAAGATTGCTGAGAAGCAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAAGAGGTCCCTGGATGCCGACCTAGCTGTGCTCCAAATTCAG
Seq C2 exon
TTTTCACAGTGTACAGACAGAATTAAAGACCTGGAGAAACAGTTCGTAAAGCCTGATGGTGAGAATAGAGCTCGCTTCCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAAAATTAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'20-24,'20-22,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCATGCTGAAACACGCCA
R:
TCTTTCCCTGGAAGGAAGCGA
Band lengths:
306-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)