GgaEX6000488 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13693983-13701973:-
Coord C1 exon
chr1:13701749-13701973
Coord A exon
chr1:13700895-13701123
Coord C2 exon
chr1:13693983-13694111
Length
229 bp
Sequences
Splice sites
3' ss Seq
TCACTTGGGACTCATTGCAGCGG
3' ss Score
5.89
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGAACTGCAGAAACAACACATGAAAAATAAAAATAACGCAGCAATTAAAGAGAGTCTCAAAAATGATTGTTCCAAAGTCGCACAAGTCATGTATGAAATGAATGAAAAGAAAAAGCAACAGGTTTTGGATCTTGACGGACTTACCAATGCAGTCACCCGCATTGAAGAGGAAATTGCACAACTGCACAAGAAGTACAAGAGAGCCACTGAGGAACAAACTGAGAG
Seq A exon
CGGCCTTCTGCTTAGAAGTCGAGAAGAAGAAATATGTATTTTATATGAAAAAATAAATGCACAAGAGTTTTTGTGTAGAAAAGGAGATATTGAGATGCAAGCTACGGATGAAAAGATCAGTTTTCTGAAGATGAAGGTGGCTGAGAAAGAGAGACAGATCAAATTCTGGCTCAAAGCACTCCCAATGAAGAGAGTCCTGGACGCAGAGTTGGTCGTACTTCAGATACAG
Seq C2 exon
TATTCCCAGTGCAAGGACAGGATTAAAGAGATGGAGGAAATCTTTGTGGACCCCACAAATGAGAGCAGAAAGCGAGACCTGGGAGGGAAAGACCCATCTGCACCTGAACTGCAGAAGAAGATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=0.395
Domain overlap (PFAM):
C1:
PF085815=Tup_N=PD(28.4=27.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGCAATTAAAGAGAGTCTCA
R:
CAGGTGCAGATGGGTCTTTCC
Band lengths:
296-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]