DreEX6002520 @ danRer10
Exon Skipping
Gene
ENSDARG00000026855 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20551757-20552154:-
Coord C1 exon
chr4:20552087-20552154
Coord A exon
chr4:20551954-20551999
Coord C2 exon
chr4:20551757-20551854
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGATGTCTTTCTGTCTACAGGCC
3' ss Score
10.8
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
TCTTGGGATTGTACTTACCAACGGTCACGGGAAGAATGTTTTCATCGGAAATGTTTCAGTTGAAGAAG
Seq A exon
GCCTACATGACCTGACTGCGTCTGATGTCAGTATTGCTCAAGAATG
Seq C2 exon
GACATACTGTGAGACAGACATCGATCCACATCATCGCAAATTGACGCAGCTTCAGGCCGTGGTTCGGTATTTAACAGGAAAAGAACCAGATCTGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026855-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCAACGGTCACGGGAAG
R:
TCCTGTTAAATACCGAACCACG
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]