DreEX6003631 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6590537-6600312:-
Coord C1 exon
chr7:6599942-6600312
Coord A exon
chr7:6595825-6595894
Coord C2 exon
chr7:6590537-6590655
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTGTGTTTCTTCAGGAA
3' ss Score
11.43
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACTTTGAAACCAGATCCATTGGCCGATCACTGGGTTGTGATTGGCTTGTTTTTTCGTCAGTTCTCATTGGCTGTCTGGAAAAGTGTCGTCTGCTAGTGTGCTTTAGTCAAACTGAAACATGGAGCCCATCTGCGCCACTGGAATGGCTGCGAGGCTGCGGAGTCAGTGGGATCGAGACGCGGGTTTGGGTCAAAACCACAACGCTGTCAAGTTCTTGGGTCAAGATTACGAGACGCTGAGAGCTCAGAGCCAGCAGAGCAGACGACTGTTTGAGGATCCAATGTTCACCGCCAGCAGCTCTTCTCTGGGCTTCAATGAACTCGGCCCGCGATCCTCCAAAACACAAGGAGTGCGCTGGATGAGACCCAAG
Seq A exon
GAAATGTGTGCGCGTCCTCAGTTTATCGTGGATGGAGCCACTCGCACAGACATCTGTCAGGGAGCGCTGG
Seq C2 exon
GTGATTGTTGGCTGCTGGCTGCTATCGCGTCCCTGACTCTGAATGATAATCTGCTGCATCGCGTGGTGCCGCACGGACAGGACTTTGACAGCAGATATGCAGGAATATTCCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=40.5)
A:
PF0064816=Peptidase_C2=FE(7.7=100)
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGCAGACGACTGTTTG
R:
ACGCGATGCAGCAGATTATCA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]