RnoEX0016659 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221368713-221369600:-
Coord C1 exon
chr1:221369333-221369600
Coord A exon
chr1:221369119-221369188
Coord C2 exon
chr1:221368713-221368831
Length
70 bp
Sequences
Splice sites
3' ss Seq
CAGGATTGTGGGTCTTGTAGGAA
3' ss Score
4.99
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GATGGCAGAGGAGTTAATCACACCTGTGTACTGCACCGGGGTGTCAGCCCAAGTGCAGAAGCAACGGGACAAGGAGTTGGGCTTGGGCCGCCATGAAAATGCCATCAAGTACCTGGGCCAGGATTATGAAAATCTTCGTGCAAGATGCCTGCAGAACGGGGTCCTCTTCCAAGACGATGCCTTCCCTCCAGTTTCTCATAGCTTGGGCTTCAAGGAACTGGGTCCCAATTCCTCTAAAACCTATGGCATCAAGTGGAAGCGTCCTACG
Seq A exon
GAACTGCTGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGAACGGACATCTGCCAGGGAGCACTGG
Seq C2 exon
GGGACTGTTGGCTCCTGGCTGCCATTGCCTCGCTCACTCTCAACGAGACTATCCTCCACCGAGTGGTTCCCTACGGCCAGAGCTTCCAGGAGGGCTATGCTGGCATCTTTCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=38.2)
A:
PF0064816=Peptidase_C2=FE(23.2=100)
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGCTTCAAGGAACTGGG
R:
TGAAAGATGCCAGCATAGCCC
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]