DreEX6004715 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21290948-21294845:+
Coord C1 exon
chr7:21290948-21291080
Coord A exon
chr7:21294340-21294479
Coord C2 exon
chr7:21294635-21294845
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGTGGCTTCACAGATC
3' ss Score
9.68
5' ss Seq
GAAGTAGGA
5' ss Score
2.43
Exon sequences
Seq C1 exon
GAATCGTATTCGTCAGTACCCAGCACTGGTCAACTGCACAACAATAGACTGGTTTTCTGAATGGCCACGCGACGCTTTGTTGGAAGTGGCAGAAAGATGTTTGGATGGACTGTCTCTTGGGAGCGATGATGGG
Seq A exon
ATCCAGACTAAAGTTGCCAGTATCTTCGTCACCGTGCACCAGTCTGTGGCCCAGTTCTCTCACAGGATGAAAGTAGAGCTGAAGAGACACAATTACGTCACACCAACCAACTACCTGGAGCTCGTTTCTGGATACAAGAA
Seq C2 exon
GCTGTTGTCTGAGAAGCGCGATGAGCTTGGAGAGCAGGTGTCGAAGTTGAGGAACGGCTTGTTTAAGATTGATGACACACGCACTAAGGTAGAGGCCATGTCTGTGGAGCTGGAGGAGGCCAAGAAGAAAGTCGCCGAGTTCCAGAAACAGTGTGAGGAATATCTGGTTGTCATCGTGCAGCAGAAGAGAGAGGCTGATGAACAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'60-64,'60-63,61-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.4=100)
A:
PF127802=AAA_8=FE(17.2=100)
C2:
PF127802=AAA_8=PD(0.7=2.8),PF127772=MT=PU(16.6=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTGTTGGAAGTGGCAGA
R:
GCTGCACGATGACAACCAGAT
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]