MmuEX6086680 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69448392-69451354:-
Coord C1 exon
chr11:69451222-69451354
Coord A exon
chr11:69450999-69451138
Coord C2 exon
chr11:69448392-69448602
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATTATTGGCTTCAGATC
3' ss Score
6.35
5' ss Seq
AAAGTACGA
5' ss Score
4.65
Exon sequences
Seq C1 exon
GAATTGGATTCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACATTATAGGAGTGGACTTGGGGACACAGGAGAAT
Seq A exon
ATCCACAGGAAAGTGGCCCAAATCTTTGTCACCATGCACTGGTCAGTGGCTCAGTATTCCCAGAAGATGCTGTTGGAACTGCGGAGATACAACTATGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATATAAAAA
Seq C2 exon
GCTTCTGGGAGAAAAGCGGCAGGAGCTGCTGGACCAAGCCAATAAGCTTCGAACTGGATTGTTTAAGATTGACGAAACTAGGGAGAAAGTCGAAGTGATGTCCTTGGAGCTGGAGGACGCCAAGAAAAAAGTGGCAGAGTTCCAGAAGCAGTGCGAAGAATACCTGGTCATCATTGTGCAGCAGAAGCGGGAAGCAGATGAGCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'83-81,'83-80,84-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.2=100)
A:
PF127802=AAA_8=FE(17.0=100)
C2:
PF127802=AAA_8=PD(0.7=2.8),PF127772=MT=PU(16.6=78.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGTTCTCAGAGTGGCC
R:
CTTCGCACTGCTTCTGGAACT
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types