RnoEX6048037 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56057339-56060625:-
Coord C1 exon
chr10:56060493-56060625
Coord A exon
chr10:56060269-56060408
Coord C2 exon
chr10:56057339-56057549
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATTATTGACTTCAGATC
3' ss Score
6.83
5' ss Seq
AAAGTACGA
5' ss Score
4.65
Exon sequences
Seq C1 exon
GAATTGGATCCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACCTTGTCGGAGTGGACTTGGGGACACAGGAGAAT
Seq A exon
ATCCACAGGAAAGTGGCCCAGATCTTTGTCACCATGCACTGGTCGGTGGCCCAGTATTCCCAGAAGATGCTACTGGAGCTGCGGAGACACAACTACGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATACAAAAA
Seq C2 exon
GCTTCTGGGAGAAAAGCGGCAGGAACTGCTGGATCAAGCCAACAAGCTTCGAACTGGATTGTTCAAGATTGACGAGACTCGGGAGAAAGTCGAAGTGATGTCGCTGGAGCTGGAGGACGCCAAGAAGAAGGTGGCTGAGTTCCAGAAGCAGTGTGAAGAGTACCTGGTCATCATCGTGCAGCAGAAGCGGGAAGCTGACGAGCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'76-77,'76-74,77-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.2=100)
A:
PF127802=AAA_8=FE(17.0=100)
C2:
PF127802=AAA_8=PD(0.7=2.8),PF127772=MT=PU(16.6=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCTAGAGGTGGCTGAGA
R:
TTCTGCTGCACGATGATGACC
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]