DreEX6004722 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21266172-21272415:+
Coord C1 exon
chr7:21266172-21266276
Coord A exon
chr7:21269417-21269605
Coord C2 exon
chr7:21272330-21272415
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTATTCTCTCCAGGAG
3' ss Score
10.69
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GACCTTTTCCTACTGGGTTCGATGGGGCCCCCTGGTGGAGGGAGGACTCACATATCAGGACGCCTACAGAGCCGATTTAACCTGATCAACATGACTTTCCCTACA
Seq A exon
GAGTCTCAGATAAAGCGCATCTATGGGACCATGATCAGTCAGAAGCTGCAGGAGTTTGAGGAGGAGGTGAAGCCCATCGGGGGGATTCTGACTCAGGCCACCCTGGAGCTCTACCATGCCATCACCTCCCGCTTCTTACCCACGCCTGCAAAAATACATTATCTCTTCAACCTCAGAGACATCTCCAAG
Seq C2 exon
GTGTTCCAGGGTCTGTTGCGAGCGCACAAAGACTTCCACGACACCAAACAGAGCATCACACGCCTCTGGATTCATGAGTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(22.9=100)
C2:
PF127752=AAA_7=PD(9.2=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTTCCTACTGGGTTCGA
R:
GCACTCATGAATCCAGAGGCG
Band lengths:
186-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]